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genome de novo assembly  (Plasmidsaurus)


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    Plasmidsaurus genome de novo assembly
    Genome De Novo Assembly, supplied by Plasmidsaurus, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genome+de+novo+assembly/assembly+de+novo+plasmidsaurus/pmc12456302-649-0-8
    Average 86 stars, based on 1 article reviews
    genome de novo assembly - by Bioz Stars, 2026-10
    86/100 stars

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    other:

    Article Title: Uncovering phenotypic inheritance from single cells with Microcolony-seq
    Article Snippet: Genome de-novo assembly and annotation was performed by Plasmidsaurus.



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    Flowchart illustrating the Colora Snakemake workflow. (A) Full workflow in case of primary assembly; (B) skip Purge_dups step, full workflow in case of phased assembly; (C) skip FCS-GX step; (D) skip Purge_dups and FCS-GX steps; (E) executed only in case of phased assembly; (F) assembly quality inspection (checkpoints are dependent on the workflow configuration); (G) mandatory input; (H) optional input.

    Journal: Bioinformatics

    Article Title: Colora: a Snakemake workflow for complete chromosome-scale de novo genome assembly

    doi: 10.1093/bioinformatics/btaf175

    Figure Lengend Snippet: Flowchart illustrating the Colora Snakemake workflow. (A) Full workflow in case of primary assembly; (B) skip Purge_dups step, full workflow in case of phased assembly; (C) skip FCS-GX step; (D) skip Purge_dups and FCS-GX steps; (E) executed only in case of phased assembly; (F) assembly quality inspection (checkpoints are dependent on the workflow configuration); (G) mandatory input; (H) optional input.

    Article Snippet: Colora is the first automated workflow for de novo genome assembly implemented in Snakemake that integrates PacBio Hifi, ONT, and Hi-C reads to produce complete chromosome-scale assemblies.

    Techniques: